lcdblib package

Subpackages

• lcdblib.expression package
  • Submodules
  • lcdblib.expression.expression_utils module
  • Module contents
• lcdblib.images package
  • Submodules
  • lcdblib.images.SVG module
  • Module contents
• lcdblib.pandas package
  • Submodules
  • lcdblib.pandas.utils module
  • Module contents
• lcdblib.parse package
  • Submodules
  • lcdblib.parse.atropos module
  • lcdblib.parse.bamtools module
  • lcdblib.parse.dupradar module
  • lcdblib.parse.fastq_screen module
  • lcdblib.parse.fastqc module
  • lcdblib.parse.featurecounts module
  • lcdblib.parse.picard module
  • lcdblib.parse.rseqc module
  • lcdblib.parse.samtools module
  • Module contents
• lcdblib.plotting package
  • Submodules
  • lcdblib.plotting.basic module
  • lcdblib.plotting.colormap_adjust module
  • lcdblib.plotting.compare_rnaseq_and_chipseq module
  • lcdblib.plotting.results_table module
  • Module contents
• lcdblib.snakemake package
  • Submodules
  • lcdblib.snakemake.aligners module
  • lcdblib.snakemake.helpers module
  • lcdblib.snakemake.interface module
  • Module contents
• lcdblib.stats package
  • Submodules
  • lcdblib.stats.fisher module
  • Module contents
• lcdblib.utils package
  • Submodules
  • lcdblib.utils.chrom_convert module
  • lcdblib.utils.imports module
  • lcdblib.utils.utils module
  • Module contents

Submodules

lcdblib.logger module

Configures a global logger

class lcdblib.logger.InfoFilter(name='')

Bases: logging.Filter

Simple filter to only output debug and info to stdout.

http://stackoverflow.com/questions/16061641/python-logging-split-between-stdout-and-stderr

filter(rec)

Determine if the specified record is to be logged.

Is the specified record to be logged? Returns 0 for no, nonzero for yes. If deemed appropriate, the record may be modified in-place.

Module contents