.. lcdb-workflows documentation master file, created by
   sphinx-quickstart on Tue Jun 28 18:12:31 2016.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

LCDB workflows
==============

**LCDB workflows** is a collection of `snakemake
<https://bitbucket.org/snakemake/snakemake/wiki/Home>`_ workflows combined with
supporting infrastructure to support best-practices, reproducible, highly
parallel processing of high-throughput sequencing data on a high-performance
computing cluster.

Contents:

.. toctree::
   :maxdepth: 2

   setup
   testing
   config
   mapping
   kallisto
   references
   metadocs



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`