Module ``lib.common``
=====================

This module contains various helper functions used by the workflows. It has two
main types of functions, those for handling configuration information those for
handling references.

.. currentmodule:: lib.common

Functions for handling configuration
------------------------------------

.. autosummary::

    resolve_config
    references_dict
    get_references_dir
    get_sampletable

Functions for handling references
---------------------------------

.. autosummary::

    gzipped
    cat
    filter_fastas
    twobit_to_fasta
    download_and_postprocess

Details
-------

.. automodule:: lib.common
    :members: